Sentence examples for realignment is done from inspiring English sources

Next, realignment is done for motion correction followed by spatial normalization onto the Montreal Neurological Institute (MNI) space (3-mm isotropic voxels).

Then, local realignment was done with an in-house short reads aligner with a small seed size (k = 11) (Qgram-SmithWaterman).

Duplications were removed via Picard v1.93, and local realignment was done by GATK v2.4-7.

Base quality recalibration and indel realignment were done with the help of GATK (DePristo et al., 2011).

InDel realignment did not heavily reduce the number of SNVs identified by SAM compared to PL or UG, indicating that SAM effectively removed false positives prior to IR with GATK (only 1,518 less SNVs were identified with SAM when InDel realignment was done prior to variant detection).

Then the 5 echoes of the remaining images were realigned to correct for motion artifacts (estimation of the realignment parameters is done for one echo and then copied to the other echoes).

To improve this process, a BAM file realignment may be done by using GATK [ 34] prior to the SNV calling.

NY 240 was realigned south to Ellicottville in the mid-1960s, after numerous bypasses and realignments had been done by the State of New York Department of Public Works.

Nevertheless, as surrounding cities such as Costa Mesa and Huntington Beach have seen increases in property crime after realignment — a comparison was done of the 17 months before realignment with the same length of time after realignment went into effect — Newport saw a small decrease, 1.3%.

A small realignment in LaGrange County was done in 2005, in which the roadway was straightened.

Realignment and recalibration was done using the following settings within the software.