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Since 1995, Veterans Health Administration facilities have undergone extensive restructuring and realignment in order to improve healthcare service delivery and administrative operations [ 34].
We did not use the Multiz alignments, because they contain three additional genomes (insects), and removing those sequences would effectively require a complete realignment in order to obtain a fair comparison between screens performed on different input alignments.
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This additional smoothing was applied during the realignment process only in order to obtain the realignment matrix.
So, if the NL product and the AL product becomes the same, realignment would be in order, to give the fans what they want — and, of course, to give the owners the chance to make the most money out of the regular season.
Briefly, mapped bam files were filtered for redundant reads and local realignment was performed around indels in order to remove potential mapping artifacts.
We modelled the six realignment parameters as effects of no interest, in order to account for possible group differences in head movement.
In the second step, where the organic crystal nucleation takes place, only a slight azimuthal realignment of the molecules can be caused in order to optimize the lattice match at the interface.
The alignments were processed with samtools to remove PCR duplicate and with GATK in order to perform local realignment around the indel position, base quality score recalibration and insertion/deletion calling (InDels), while variation calling was performed with MuTect thus identifying all the point mutations in the sample (SNVs).
In particular, for the temporal realignment algorithm that is needed for the FR metrics in order to correctly estimate the NR parameters, we plan to test a novel re-synchronization procedure.
In order to confirm that the sensorimotor realignment was retained throughout the entire post-adaptation configural face processing task, a third set of open-loop pointing errors were recorded at the end of the experiment ('late-test').
This is evident even within some of the sites we studied; a number of coastal sites had allowed or even facilitated coastal realignment and the incursion of salt water into freshwater areas in order to improve protection of the remaining part of the site.
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