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RESULTS: Thirty-one cases, including nine additional cases with variant pathology reads, were presented.
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For RNA-seq data, the mapped sequenced reads are presented in BAM format for four libraries in Data Citation 2: Gene Expression Omnibus GSE59528.
Data regarding the depth and quality of the reads are presented in Table 1.
Exon junction reads are presented on top.
Total reads and unique reads are presented in the left panel and right panel, respectively.
The 33 most abundant miRNAs (i.e. those with > 1,000 reads) are presented in Table 1.
The overall strategy of de-novo assembly by utilizing HQ reads is presented in Figure 1.
The detailed statistics of these "cleaned" reads are presented in Table 1 and Fig. 1.
The final results and steps to generate de novo assembly of pepper IGA reads are presented in Table 4.
Next, readPro sifts the qualified clean reads according to the user-specified length criteria), and the qualified clean reads are presented in fasta format.
The number of reads that were eliminated from data so as to retain only the HQ reads is presented in Table 1.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com