Exact(6)
In general, a reader in an RFID system usually reads tags only once in a frame.
Once a reader reads tags in its range, it acknowledges them (before the next reader in sequence starts operation) which puts them to sleep for this read cycle.
These short sequence reads (tags) are then aligned to a reference genome.
As shown in Table 1, 1.6 and 1.3 million reads (tags) were obtained from liver tissue of the Tg/Tg and +/+ fish, respectively.
These short sequence reads (tags) are then aligned to a reference genome and binding sites are identified on the basis of their significant accumulation at particular genomic loci using various peak detection algorithms [ 4].
A list of all ChIP-seq data sets can be found in Additional file 2. If aligned files were not provided, we downloaded corresponding unaligned files (.fastq) from the SRA website (http://www.ncbi.nlm.nih.gov/sra) and mapped sequenced reads (tags) to the mouse reference genome (mm9) using the Bowtie aligner with the same parameters as described previously [ 56, 57].
Similar(54)
We discarded 984,258 reads tagged as repeat by RepeatMasker [ 24].
The Arabidopsis reads tagged more than 15,000 genes, including new splice variants and extended UTR regions.
Nevertheless, our two short reads tag has more sensitivity and specificity over SubAssembly's 17-base single end tag.
The reads tagged an estimated 17,499 cDNAs, which is nearly identical to what our simulations would predict for that amount of GS20 data.
Current RFID systems also have trouble reading tags through liquids and metals.
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