Sentence examples for reads of sites from inspiring English sources

Next, we calculated the expected reference allele ratio for each individual by summing up reads across all sites separately for each SNP allele combination after down-sampling reads of sites in the top 25th coverage percentile in order to avoid the highest covered sites having a disproportionally large effect on the ratios.

For quality control, we calculated the average quality score of sites and reads of each sample.

Now, emboldened by recent legal rulings, the publishers have restored the Web pages, again publishing instructions on how to read lists of sites that are filtered and linking to the circumvention program.

Paired-end sequence reads of restriction site associated DNA sequencing for 166 RILs and their parents were obtained from the Sequence Read Archive (SRR1236437 and SRR1236438 41.

We include protocols for RNA isolation from Saccharomyces cerevisiae, Pseudo-seq library preparation, and data analysis, including descriptions of processing and mapping of sequencing reads, computational identification of sites of pseudouridylation, and assignment of sites to specific pseudouridine synthases.

To further exclude the reads that were misaligned due to unexpected structural variations, we rejected the sites with significant bias in strand distribution of the reads or sites with skewed within-read position between the reference and alternative alleles.

Two were insertions of 6 bp and 8 bp present at the end of reads, a common site of false positive calls.

An inscription on the building at the corner of Teviot Place and Bristo Street reads "1513 Site of Town Wall", although it was the 17th-century Telfer Wall, not the earlier Flodden Wall, which stood on this spot.

In heavily methylated species such as mammals, the measure of interest is usually the fraction of methylated reads ('C' reads) in the total number of reads per site, the so-called 'fractional DNA methylation' [ 13– 15].

The total number of reads covering these sites were 9468378 and 15642919 reads respectively, leading to a read error rate of ~0.1 for both types.

Therefore, the anchoring of reads to restriction sites and the bias in sequenced fragment sizes were two sources for reduced representation in genome coverage in GBS datasets.