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The second stage involves mapping reads independently and then pairing each read with its counterpart.
Processing the Ves and Flanking reads independently necessarily resulted in files where the number of sequences and sequence order were different.
We again employed the Bowtie short read alignment program to map each sample of short reads independently to the refined set of reference transcripts.
We also aligned the same reads independently to the D. melanogaster- and D. simulans-specific exomes, masking indels identified by the pairwise alignments.
Since valid Hi-C reads do not represent one continuous genomic sequence, the pipeline maps forward and reverse reads independently and then re-pairs sequences in which both ends aligned unambiguously to the genome.
The Burrows-Wheeler Alignment Tool (Li and Durbin, 2009) was used to align the paired end reads independently to the human genome (hg19), allowing two mismatches and no gaps.
Similar(49)
The Dickman brothers' poems bear reading independently, but, together, the resonance of the work is amplified.
It's suitable for a child around seven, or a child a bit older than that could read independently.
For example, asking pupils to read independently is great, and useful at most ages, although by itself it won't help someone struggling with the basics.
They enjoy discussing and sharing books but are equally happy to sit quietly and read independently, in their own little world.
He compares it to a car manual in which the section on tires can be read independently from the one on lights.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com