Sentence examples for reads for input from inspiring English sources

All contigs and singletons resulting from the Newbler assembly were combined with adaptor-containing reads for input into PTA.

The sequence reads for the input samples were trimmed to be equal in length to the immunoprecipitated (IP) samples.

For all three assays, the respective controls (antisense reads for RNA-seq; input for Pol II ChIP-seq; antisense reads for GRO-seq) showed no difference among the three TE groups.

The sequence reads for GFP and Input were aligned to the reference mouse genome (mm9, build 37) using Bowtie 2 software (version 2.2.2) [ 45].

As the processing of each read (or paired reads for pair-end input data) is independent, Meta-QC-Chain appoints weighted and balanced tasks, each including a suitable number of reads (which is dependent on both the total read number and the assigned CPU core number), to different threads, then processes different CPU cores simultaneously and in parallel.

To accumulate information, all reconstructed transcripts are used as input reads for the next iteration.

Genome coverage as dictated by the total number of reads for enriched and total input fractions.

In pipeline 4 we used TriageTools [ 25] (v0.2.0), a tool that efficiently screens input reads for similarity to a specific target sequence.

Resulting contigs from Velvet were treated as input reads for downstream assembly with Celera Assembler (Myers et al., 2000) version 6.1, to produce 356a draft assembly.

During each iteration, an accumulated de Bruijn graph H k for a fixed k is constructed from the input reads and the contigs constructed in previous iterations, i.e. those contigs constructed in H k- s are treated as input reads for the construction of H k. The depth information is used to separate de Bruijn graph into components.

The published total mapping reads for the study were inputted to EdgeR.