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Of these, 6236435 and 5491692 reads contained one or more low quality positions in the left and right end reads (defined as having the lowest base quality scores).
Nevertheless, the average coverage of good reads (defined as reads that are (a) mapped with no more than 3 mismatches (see Methods), and (b) either in good pairs or single ends) from both platforms are almost identical at about 25×, as summarized in Table 1.
Next, the low quality reads (defined as reads having more than 20% of bases with quality ≤ 10) were trimmed.
The gene expression levels are calculated by [ 7] using the mapped RNA-seq reads for mouse ESC from [ 33] according to the reads per kilobase of exon per million (RPKM) mapped sequence reads defined in [ 34].
Using NGSView, it is possible to very quickly go from a zoomed in sequence level view, to a zoomed out view of an entire chromosome, and editing operations can be performed on any subset of reads defined by the user.
6. Define the similarity graph as an undirected weighted graph with vertices corresponding to the reads and weight of an edge connecting two reads defined as the number of anchors corresponding to the pair of reads.
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54 % of all assigned reads represent singletons, while the remaining 46%% of all reads define non-singletons.
Tzedukah, Hadassah, mah jong, knitting and reading defined her days and we will always remember how she danced with Papa Jack.
Primo Levi – who wrote Survival in Auschwitz (published in Britain as If This Is a Man), perhaps the best book I have read – defined himself as a chemist more than a writer.
The companies that are leading the way there (Fenton cites Dropbox and, of course, portfolio companies Zendesk and New Relic) let this consumer and product focus permeate (read: define) the culture of their companies.
Also read: Defining the Functions of Management: Plan, Organize, Motivate, Control Planning is a Vital Part of Business Success.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com