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The uniquely mapped reads covered approximately 94% of the Nipponbare genome in all five accessions (Table 1).
However, the additional information gained from sequencing these adjacent marched reads covered the previous gap and stitched the two contigs together into a much longer total covered area.
These reads covered over 90% of the A. caninum transcriptome with an average depth of 10×.
Uniquely mapped reads covered 81 95% of the reference genome with 11.3 33.2× coverage.
The reads covered 89 to 92% of the reference genome sequence.
The obtained reads covered 99.9% of the cp genome of J. vulgaris (Table 1, Fig. 3).
In total, 56% of reads covered 76% of UMD3.1 to an average depth of 6.8 reads per site (Table 2).
The raw Illumina reads cover the NMR genome with a depth of 12.0X, 14.9 ×, and 16.9×, respectively.
On average, nearly six reads covered each detected SNP, with approximately 1% more coverage on macrochromosomes than on microchromosomes.
On average across the whole samples, the reads covered 99.23% of the genome (supplementary table S1, Supplementary Material online).
The 11,275 NaS reads cover 99.96% of the reference genome and align with an average identity of 99.99%.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com