For example, SNVs can be directly extracted from RNA-seq reads and then correlated to gene expression [106].
The number of reads correlated approximately with the number of encoded 16S rRNA genes; 306 reads and 2 operons in H. pylori, 478 reads and 6 operons in S. pyogenes, and 828 reads and 7 operons in E. coli.
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Mother's education and ability to read and write were correlated (r = 0.52, p = < 0.001; and r = 0.54, p-value < 0.001, respectively).
FDG-PET/CT findings from clinical reports, blinded reading and quantitative analysis were correlated with clinico-pathological characteristics at RP. Suspicious foci of increased FDG uptake were found in the prostate, LNs and bones in 44, 13 and 6% of patients, respectively.
The first principal component (PC1) of all available measures extracted a large proportion of shared trait variance across the two domains of reading and language, and was highly correlated with the component derived from only reading and spelling (PC1read).
Interestingly, we found that the fraction of wrongly oriented reads was correlated with fragment size, and in extreme cases 85% of MPs derived from fosmids mapped in the wrong orientation and overlapped each other (Supplementary Fig. S6).
Another observation is that the amount of assigned reads correlates strongly with the read length.
Summarizing all simulations, one observation can be made: The amount of total assignments of reads to taxa correlates with the read length.
The procedure used is designed to identify TSS but, assuming that the number of cDNA reads correlates with transcript abundance, the results also provide a semi-quantitative documentation of the differences in T. kodakarensis genome expression under different growth conditions and confirm previous observations of substrate-dependent specific gene expression.
