Sentence examples for reading orientations from inspiring English sources

The LT and STIa region was located 13.5 kb apart and was surrounded by three IS 1s and an IS 600 in opposite reading orientations, indicating that the enterotoxin genes may have been horizontally transferred into the plasmid.

Viewing also provides more detail than a univariate score, including coverage, error locations within reads and read orientations.

The construction techniques for such libraries often result in read orientations different from those of typical paired-end libraries.

In this case, the combination of two read orientations implies ~2000 non-redundant dimensions within a 4096-dimensional signature vector.

In addition, all called variants should ideally be supported by data from both read orientations (forward and reverse).

SVachra calls large insertions-deletions, inversions, inter- and intra-chromosomal translocations, reporting breakpoints in the inward facing orientation thereby eliminating the contradictory outward facing read orientations.

For each position j in the genome and nucleotide, let X ijk, denote the count of that nucleotide in forward and backward read orientations in sample i.

This maintained both read orientation and relative coverage bias in the simulated data.

According to the separation distance and read orientation, SVs can be inferred.

Another important issue for downstream analyses that comes with library preparation is read orientation.

CREST [ 16] is another method that utilizes split mapped reads as well as paired-end read orientation.