Sentence examples for read with respect to the from inspiring English sources

This is still an important amount, considering that two mismatches is very permissive (it represents almost a 10% of nucleotide substitution in the read with respect to the reference sequence).> -wrap-foot> Counts for the tags mapping over the reference data sets depicted in Figure 2. Total (distinct) tags: 40,670; mapped tags: 30,053; orphan tags (tags not mapped): 10,617.

If we magically knew a priori the endpoints of the correct alignment of an observed sequence read with respect to the yield of the RNA model, we could derive a new model that used base-pair states where we had both residues, and converted pair states to appropriately marginalized single-residue states where the pairing partner was missing.

Although we could, in principle, affect the reading of a barometer by changing the atmospheric pressure, this would not count as an intervention on the barometer reading with respect to the occurrence of a storm.

We defined novel sequence of the Mongolian genome using unmapped reads with respect to the reference human genome.

We defined the primary ORF in a transcript as the ORF with the largest number of RPF reads with respect to the total RPF reads covering the transcript.

If this is the case, the distribution of reads with respect to the observed genome coverage should differ between raw and corrected reads.

In contrast, only very few reads that mapped to multiple locations matched coding regions of genes which indicates excellent specificity of our RNA-Seq reads with respect to the corresponding target transcript.

The 5'- and 3'-arm usage of miRNA hairpins was quantified as a proportion of the 5p-associated reads with respect to the total number of reads from miRNAs in A. gambiae.

The HLA-C locus also shows a weaker REF allele bias, a pattern that may be explained by its lower degree of polymorphism which leads to a decrease in the number of mismatches of reads with respect to the reference genome, thus decreasing the mapping bias.

In addition, several RFs still exhibited a very small number of interaction reads with respect to the average (less than a few dozens reads re. the HindIII-MspI experiment), as seen on Additional file 1: Figure S2 B were the distribution of the euclidian norms of all fragments is plotted.

The categorization of sequence reads with respect to the expected cDNA insert structure reflecting cDNA library construction protocols is a complex procedure due to the numerous variations that can be made in the molecular biology steps employed for cDNA library construction.