Sentence examples for read to represent from inspiring English sources

Among these n j individuals, we randomly select one read to represent a haploid genome of this individual.

Coverage plots were generated by adding 147 bp to the first base pair of an Illumina/GAII read to represent the canonical nucleosome.

In a given tag sets, we use the starting point of each tag (5'-end of each read) to represent the tag, avoiding the effect of unwanted low-pass filtering of sequence reads, and get tag profiles in binding regions.

In the following analysis, we decided to extract 26-bp sequences from all the reads to represent SuperSAGE tag.

For multiple sequence alignments, we used only sequences for which multiple sources of evidence were available, i.e. EST or RACE reads, except for SCRiPs found in the coral Montipora capitata (Mcap-SCRiP1a and Mcap-SCRiP1b), for which we assumed the EST reads to represent either isoforms or to contain a few sequencing errors.

We excluded the CB4858 datasets due to the inherent inability of short reads to represent loci with highly clustered polymorphisms.

We obtained the RNA-seq data from ENCODE and computed RPKM (reads per kilo-bp per million reads) to represent the gene expressions.

We then removed all reads with organellar hits from the original read file and selected a random sample of the remaining reads to represent an estimated 0.0025X of the genome.

As accuracy in reading ability needs to be combined with reading speed to represent reading capacity, time per correct word was used to measure irregular and non-word reading capacity.

CLC bio's de novo assembly algorithm uses de Bruijn graphs to represent overlapping reads, which is a common approach for short read de novo assembly that allows a large number of reads to be handled efficiently [ 48- 50].

Mortazavi et al. proposed to use Reads Per Kilobase per Million mapped reads (RPKM) to represent the expression level of the transcript [ 16].