Sentence examples for read the alignment from inspiring English sources

The blastn algorithm is a local alignment algorithm, so if there are SNPs in the first or last 2 bp of a read, the alignment will be truncated, although it is still considered a full length match (Figure S1.18).

▪ Create perl scripts that read the alignment results and convert them to standard GFF3 format.

If another exact seed with smaller offset exists in the read the alignment is filtered as a duplicate, otherwise the alignment is recorded.

Long alignments are challenging for phylogenetic tree building programs as many of these programs have a limit on the number of input characters or cannot access enough RAM to read the alignment.

We then used the seqinr package [ 44] in R to read the alignments, and subsequently calculated gene-by-strain dN and dS values using the kaks command.

By recognizing the formation and by reading the alignment and stances of the offensive linemen, Strahan was often able to anticipate the play before the ball was snapped.

After scanning through all sequence reads, the alignment tool generates a file containing the collected information.

For each read, the best alignment to the genome was kept in the output, with the exception of chimeric reads, for which multiple alignments were retained.

Once all the conversions are performed, a key aspect for the efficient alignment of the reads is the alignment strategy.

The read alignment against the Ciona type A transcriptome was performed using the Burrows–Wheeler Alignment (BWA) tool (Li and Durbin 2009).

bPercentage of reads used in the alignment that align to the reference genome.