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We also tested FMA and MetaMap (Full Read) on detection of negation in the Negex test set of 2376 pre-anonymised annotated sentences from clinical reports [ 28].
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An early version of this software was used in Robinson et al. (2014), on Bar-Seq measurements of the yeast deletion set, to determine the effect of read depth on detection of differential abundance.
Analysis of read-depth is an effective method for CNV detection, relying on detection of changes in the depth of coverage across the genome as being indicative of changes in the underlying copy-number [ 23].
In addition, we evaluated the influence of sequencing depth (from 0.1 to 8 million reads) on gene detection efficiency.
The software performs three steps: (i) construction of the de Bruijn graph of the reads, (ii) detection of insertion breakpoints on the reference genome (find module) and (iii) local assembly of inserted sequences (fill module).
After several careful washes with BB, 50 μL of BB was added to each well and the plate was read on a LI-COR Odyssey Sa Infrared Imaging System with detectionr detection.
The plates were read on an ABI PRISM 7900 sequence detection system (Applied Biosystems).
Experiments on models of this kind have demonstrated an ability to learn such skills as face recognition, reading, and the detection of simple grammatical structure.
Plates were read on the ABI Prism 7900 using the Sequence Detection Software (Applied Biosystems).
On the interval 21 ≤ |p| ≤ 100 though, the sets of erroneous reads allow the detection of less TR than with the set of SR-NE.
After the addition of AlphaScreen beads (PerkinElmer) and detection antibody (Cell Signaling Technology, #4735) followed by overnight incubation at room temperature, the plates were read on an Envision 2101 (PerkinElmer).
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