Sentence examples for read locations from inspiring English sources

For easy access to the read locations, the BAM files were then converted to the BED format using the "bamTobed" utility from the BEDTools package [ 57].

The resulting SAM file containing the paired-end read locations was converted to BAM and then to a paired-end BED file.

If the supporting 12mers have read locations separated by Δ p, then the minimum number of mismatches between them is ⌊(Δ p+6)/12⌋ (Fig. 4A).

Alignment.Java: find read locations on the reference sequence with an exact match and one-off match (one base mismatch) to prb -derived sequences.

Candidates are generated by performing a multiway merge of position lists for all read locations in a single forward and single reverse complement pass, keeping track of the read location of 12mers that support each candidate region.

The mouse RNA-Seq datasets were available as BED files containing paired read locations, and since the read pairs had been mapped independently, we could create the single-end dataset by simply subsampling the aligned positions in a random fashion.

The phones can read location data from the GPS system and transmit that data over the wireless networks to the Internet, where each phone's location can be monitored live using a PC and Web browser.

The best scoring read location is reported as the location for that read.

Candidate calls are filtered using a series of quality metrics, including strand bias, read location bias, and a custom database of sequencing artifacts derived from normal controls.

All M. truncatula precursor sequences belonging to the families of miR159 and miR319, were gathered and analyzed for small RNA and degradome read location as well as abundance.

It would greatly help the readers to include a figure showing schematically the event and read location with respect to the introns and exons.