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Colors refer to the minimum read depth per sample.
The read depth method was evaluated using simulated datasets.
The element read depth was calculated using a window-based approach to capture read depth variation across the element.
Normalized read depth within the unique sequence was achieved by dividing the read depth, which was calculated using samtools bedcov, by the median genome coverage.
We codify these guidelines in an open-source read depth calculator.
We automatically try to read depth into passages of relative light around him.
The read depth of each 50-bp window of mPing was extracted from mpileup results.
Assessment of assembly accuracy with homopolymer and read depth coverage generated with short reads.
The nucleotide counts at the + 16 G/A SNP were obtained from the read depth profile.
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To get an approximate representation of the feature-read depth, all proportions were multiplied by the average-read depth over all samples.
Supplementary Figure 4 Cohesin HiChIP pipeline and read-depth statistics.
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