Sentence examples for read calculates from inspiring English sources

In brief, SHERA takes overlapping short reads as input, finds the best alignment, produces a composite read, calculates new quality scores for the overlapping bases, and scores the alignment confidence.

Lost to the conventional world of childhood, he reached high school without knowing how to read, calculate or, to a large degree, even speak.Mr Oher had not, however, been an indifferent student.

The genomes names and the number of read calculated for each of them are available into the Additional file 8: Table S3 for the Viral-Bacterial metagenome and the Additional file 9: Table S4 for the viral metagenome.

Unigenes were ranked according to their RPKM (from highest to lowest) and the accumulated frequency of mapped reads calculated.

SeqPig also includes functions to access SAM flags, split reads by base (for computing base-level statistics), reverse-complement reads, calculate read reference positions in a mapping (for pileups, extracting SNP positions) and more.

We used BWA 0.6.3 to map reads, calculated reads per kilobase transcript per million (RPKM), and normalized the data using a standard quantile normalization approach (for example, as in [ 26]).

After adapter detection, the reads were re-grouped to calculate the read count of unique read sequences.

Fold change cannot be calculated because read count is 0 in one metatranscriptome.

(iii) We calculated the read count for each reference sequence (Ensembl transcript).

The RPKM and read count per transcript were calculated with reads falling within the exons of each transcript.

The result was an L-dex reading, calculated from software provided by the manufacturer.