Sentence examples for read approaches to from inspiring English sources

We applied computational methods based on paired-end and split read approaches to detect genomic deletions (Methods), followed by experimental validation using array-comparative genomic hybridization (aCGH).

Further, we applied our short read approach to the transcriptome of a fungi to demonstrate the versatility of the method.

In addition, other recent studies have used the Short Sequence Reads (SSR) platform [ 13], or combined SSR and long reads approach to explore whole transcriptome modulation in response to low pH in adult Pocillopora damicornis[ 13], and in early life stages of Acropora millepora[ 14].

This low SNP density underscores the need for long-read approaches to accurately recover haplotypes within and among conspecific individuals (Dlugosch and Bonin 2012; Lai et al. 2012).

The pindel package using split-read approaches to identify large deletions and medium-size insertions in pair-end reads was used to detect structural variants in cleaned BAM files [ 27].

People who struggle to detect aggressors might benefit from being able to read approaching strangers as well, Satchell suggests.

Online, you can find yourself transitioning to entirely new layouts from moment to moment, and, each time you do so, your eyes and your reading approach need to adjust.

Our results are useful to define the most optimal experimental paired-read approach to support the de novo assembly of mammalian genomes.

Indeed, the lack of a standardized reading approach to defining vascular inflammation remains a critical issue and may lead to misclassification.

Here we applied Pindel that uses a split-read approach to examine unmapped reads spanning breakpoints, and BreakDancer that examines discordantly mapped read pairs having improper orientation relationships or span sizes [ 58, 59].

Here, we review methods for the analysis of HTS reads, including approaches to local diversity estimation and global haplotype reconstruction.