Sentence examples similar to read alignment through from inspiring English sources

This approach allowed students to focus on principles of read alignment and counting through a series of guided exercises in worksheet 3 and on discovering differentially expressed genes in worksheet 4. Students worked with files containing raw gene counts for two abiotic stresses and control samples for two genotypes generated by the instructor (see Data Set 1 in the Supplemental Material).

GBrowse allows direct insights into gene expression levels and gene structure through read alignment and read counts.

In this paper, we present VERSE, a novel approach that enhances virus integration detection through better read alignment.

Quality, read alignment quality.

AQ performed the read alignment analysis.

Alignment-Editor should read "Alignment-Annotator".

It is through our realignment scheme that we obtain the information to do this comparison, information that upstream SV callers cannot access since they do not manipulate read alignments, and instead rely on an alignment file 'as is'.

To characterize the digital gene expression profiles of L. punctata, all PE reads were used for short-read alignment through the perl script provided by Trinity package (v2012-06-08) [ 46].

DC contributed to the reads alignment procedure.

Read alignment was performed by Tophat v2.0.4 [ 21] and Star v2.3.1o [ 20] on raw reads and on quality reads, i.e. reads that had been through adapter removal and quality trimming (see Methods).

After screening the reads through alignment with reference cp genomes and extensive contig extension efforts (see Materials and Methods for details), we collected 369,022 cp-genome-related reads (8.8% of total reads and an average of 384 bp in length), reaching 1,081x coverage on average over the cp genome.