Sentence examples for read alignment and base calling from inspiring English sources

However, the Bayesian probabilistic model could not remove the large number of false positives caused by systematic errors in read alignment and base calling.

Five different pipelines were used for read alignment and variant calling (SNVs and indels when possible) (Table 1).

The discrepancy mainly results from other factors such as characters intrinsic in sequencing platforms, read alignment and variant calling methods.

Subsequent gapped read alignment and variant calling was achieved using Bioscope 1.3.1 (Life Technologies).

Halvade provides a parallel, multi-node framework for read alignment and variant calling that relies on the MapReduce programming model.

BS-Seeker2 is a bisulfite sequencing alignment tool that performs genome indexing, read alignment and DNA methylation levels calling for each cytosine.

The whole process, from read alignment and variant detection to base correction, is run iteratively.

PE reads can provide rigorous read alignment and enhance the accuracy and coverage of SNP calling and consensus sequence inference.

To ensure maximum sensitivity, these primer bases should be intact during read alignment and post-processing steps and should be removed immediately before the variant calling step.

Reads mapped with mapping quality greater than or equal to 10 and bases with base quality greater than or equal to 17 were used for variant calling to avoid false positives due to errors in read alignment and sequencing errors.

The quality of read alignments and the regions surrounding the called SNP locations were manually inspected.