Sentence examples for read aligning from inspiring English sources

The observations were coded as 1, when at least one read aligned to the gene region, or 0 when no read aligning to the gene region was detected.

Thus the probability of an "integration site" read aligning to a specific genomic region was weighted according to the total number of reads aligning in that window.

In comparisons of filtering strategies, an exonic region was considered ambiguous (6,229) if there was at least 1 ambiguous read aligning.

Of the 39,028 genes contained in the potato, approximately 25 k genes were detected in the whole petiole samples (LD Petiole and SD Petiole) with at least one read aligning to the gene (Additional file 9: Table S8).

These candidate regions were then supplied to Pindel [ 24], which detected structural variants based on different parts of a single sequence read aligning to different locations in the genome.

Using two different short RNA-seq read aligning programs, namely Bioscope (Life Technologies, USA, Carlsbad, CA) and TopHat [ 28], we remapped all reads generated by RNA-seq in a recently published study [ 5].

Identity read identity histograms, scatter plots of read identity versus length, alignment identity versus percent of read aligned, percentage of read aligned versus length.

Any read aligned to ribosomes was removed.

ePercentage of 63,152 annotated human genes with at least one read aligned.

If a sequence read aligned equally well to more than one genomic locus, it was discarded.

Null sites occurred when neither end of a read aligned to a restriction site.