Sentence examples for reaction instance from inspiring English sources

The forth parameter is the reaction instance time in the simulation.

A reaction instance is a random event whose probability is determined by the current state of the network.

This is easily implemented by assigning a unique identifier to each network species in the initial state and to each reaction product of every reaction instance.

A reaction can be applied at a state to obtain a reaction instance if its reactants are available at that state and the reaction is picked by the simulation algorithm from all the applicable reactions.

The simulation trace is first mapped to its simulation configuration, where each vertice is a reaction instance and it is denoted with a pair: the first item in the pair is the identifier of the reaction and the second item is the time of creation.

We use these structures to quantify the causal interdependence and relative importance of the reaction instances.

The algorithm is based on marking individuals that are transformed by the reactions, and using the markings to track the causal dependencies between reaction instances during the simulations.

This is done by highlighting in a graph structure the implicit production-consumption relationship between reaction instances of the simulation trajectory.

The instantiation code enumerates all possible ways of combining the instances of X with those of Y, and generates corresponding reaction instances by substituting each class with one of its instances.

The stochastic flux shows the amount of each type of resource flowing from any specific reaction to any other reaction, thereby providing an explicit account of causality that cannot be revealed by counting reaction instances, e.g., the Oyster Reef model.

By using the unique identifiers of the species in a reaction trajectory, which implicitly indicate the production-consumption relationship between reaction instances of the simulation, we construct a directed graph structure.