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We found that the presence of these grooved topographical cues significantly enhanced VSMC aspect ratio, alignment, and oriented remodeling of the underlying extracellular matrix.
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The following parameters were considered (see explanatory Figure 3): i) ratio of alignment length to oligo length (percent alignment); ii) maximum number of mismatches; and iii) distance from the start of oligo/transcript alignment to oligo 5' end.
All but the meta-assembly show an increase in this ratio as alignment score increases (cutoff value decreasing), with the meta-assembly having several outlier contigs with good alignment scores but low ratio.
Optical microscopy was performed to consider the effect of the electric field magnitude and configuration, filler morphology, and aspect ratio on alignment process.
Micro-lens array (MLA) with high aspect ratio, precise alignment and great uniformity of focusing are crucial to the integral imaging 3D display systems.
infestans CDS) with an e-value <10−15 and an identity ratio of ((Alignment length × %ID /Unitig length) ≥90% were selected for further analysis.
Hadoop I results (filled circles in Figure 5 ): The ratio T alignment / T comm indicates weak dependency in a wide range of number of nodes N: from 4 up to 40.
Based on the above data, in order to define an high confidence pool of probes for eggplant, we selected a reasonable tradeoff between stringency and number of preserved probes: i) ratio of alignment length to oligo length >= 0.6; ii) maximum number of mismatches <= 2; iii) start of oligo alignment within the first 20 bases from 5' oligo end.
We align both the reference and the alternative alleles to the genomes of the four primates using LAST [ 16] and measure the similarity using the identity and aligned ratio from the alignment.
For each cluster that contained residues with evidence of positive selection (high Ka/Ks ratio), multiple alignments of each gene in the cluster across strains were generated and submitted to Selecton individually for confirmation, using the same parameters as above.
The CQ method can reliably identify Y chromosome sequences using the ratio of alignments from male and female sequence data.
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