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TRPV and OSM proteins from leech, Human, mouse, rat, worm, and fly were multiply aligned with clustalw [88] and trees generated from distances output by clustalw.
The user must select one of the six supported organisms covering human, mouse, rat, worm, fly and zebrafish.
ChIPseek supports 20 different genome assemblies for 12 model organisms including human, mouse, rat, worm, fly, frog, zebrafish, chicken, yeast, fission yeast, Arabidopsis, and rice.
The network incorporates data from eight different species: zebrafish, yeast, slime mold, fly, mouse, rat, worm and human and can be browsed via PhenomeBrowser (http://phenomebrowser.net/).
The majority of GPCR functional data have been derived from studies in genetic models such as mice, rat, worm and Drosophila; additional species provide new comparators for GPCR studies.
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3) The whole genome pairwise sequence similarity data from Ensembl were processed to identify reciprocal best hits as candidate orthologs for all pairwise organisms among human, mouse, rat, fly, worm, and yeast.
Only intermediate hosts have been found naturally infected with rat lung worm in Brazil.
The platform applies to human, mouse, rat, fly, worm and zebrafish.
We obtained 162 349 protein sequences annotated by ENSEMBL for human, mouse, rat, fly, worm and yeast (Birney et al., 2006).
Protein sequence and annotation data for human, mouse, rat, fly, worm and yeast were obtained from ENSEMBL release version 42 (Birney et al., 2006).
Currently, the platform supports six model organisms: human, mouse, rat, fly, worm and zebrafish and 18 of the largest, most stable miRNAs-target predictors.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com