A total of eight professional GO curators from five different MODs FlyBase (http://flybase.org/); Maize Genetics and Genomics Database (http://www.maizegdb.org/); Rat Genome Database (http://rgd.mcw.edu/); TAIR (http://www.arabidopsis.org/); WormBase (http://www.wormbase.org/)—contributed to the development of the task data.
Using the genomic coordinates provided by the Rat Genome Database [ 20], the QTL intervals cover a total of ~860 Mb bp, or 33% of the entire rat genome.
The Rat Genome Database (RGD) is the premier repository of rat genomic, genetic and physiologic data.
For instance, Rat Genome Database (RGD) (4), a knowledgebase primarily designed for rat genomic research, has provided genetic information associated with cardiovascular disease with literature proofs.
The coding region of the rat Sin1 cDNA was then used to search the rat genome database at the NCBI website for the genomic structure of the gene.
The Rat Genome Database (RGD) is the premier resource for genetic, genomic and phenotype data for the laboratory rat, Rattus norvegicus.
The Rat Genome Database (RGD) was started >10 years ago to provide a core genomic resource for rat researchers.
The six participating MODs include: Saccharomyces Genome Database, WormBase, FlyBase, Zebrafish Information Network, Mouse Genome Database and Rat Genome Database.
Custom-added strains (see, e.g., those of Rattus norvegicus in Fig. 3) were imported from NIF-Organism (http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#), Rat Genome Database (http://rgd.mcw.edu/rgdweb/ontology/search.html?term=RS%3A0000457&ont=RS), Jackson lab (https://www.jax.org/mouse-search), and flybase.org.org
Using the rat genome database (rn3, Jun.
PCR-primers for polymorphic simple sequence length polymorphisms (SSLPs) were selected from available internet databases (Rat Genome Database (rgd.mcw.edu), Center for Genomic Research, Whitehead Institute/MIT (www-genome.wi.mit.edu/rat/public), Ensembl (www.ensembl.org) and UniSTS at NCBI (www.ncbi.nlm.nih.gov).nih.gov
