Sentence examples for ranking pathway from inspiring English sources

The XTMS webserver scoring function [12] takes into account a gene score in ranking pathway results found by the RetroPath algorithm.

There are only 7 pubmed citations linking the highest ranking pathway, adrenergic signaling in cardiomyocytes, to cancer.

For example, the GR signaling pathway was identified as a top ranking pathway for Cd, Hg, iAs, and Se.

The top ranking pathway in the case of glioblastoma is the cytokine-cytokine receptor interaction pathway, whose relevance to cancer we just discussed.

Our results confirmed the significance of many of the immune response pathways, and although IL12 was not our highest ranking pathway as in Wang et al. [ 15]; it was found to be significant.

We have developed a method for ranking pathways by their degree of association with a trait of interest, which controls for the number of SNPs in the pathway.

Thus motivated, we developed a statistical test for ranking pathways by their degree of association, which controls for the confound of pathway size.

To investigate this hypothesis, we developed a novel method for ranking pathways by their degree of association with a complex trait.

The XTMS webserver [12] uses a scoring function to rank pathway results found by the RetroPath search algorithm.

In order to distinguish pathfinding methods that actively include path length as a constraint or heuristic from methods that only use path length to rank pathway results, the latter cases were not marked as using path length in Table 1.

To rank pathway terms by over-representation, we used the significance cutoffs on the EASE score (see the methods section for details on the EASE score).