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Other top ranked module pairs that share common GO terms include: Module 46 and 64, Module 26 and 64, and Module 55 and 60.
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Twenty TFs were common among the 10 top ranked modules.
Clique detects the same module, but there are some other higher ranked modules, so the drop happens later.
Among these highly ranked modules from different runs, we searched for similar modules that occurred in at least 75% of the 18 runs.
The modules were ranked in ascending order based on their significant differential expression levels (P value); thus, the top ranked modules (TRMs) exhibited greater expression differences compared to the rest of the modules.
The final step in the analysis was to screen all modules, and retain those modules most responsive to CR (or aging), while discarding less responsive modules that overlapped with more highly ranked modules.
As the topics with the most impact, the Laotian and Vietnamese fellows ranked modules 1, 2, 3 and 4 higher, while the Myanma and Cambodian fellows answered that modules 7 and 8 would have more impact.
As a first step, we proceeded through GO annotation by ranking modules according to computed FDR-corrected p-values (full details are in the previously addressed online files) in order to assess the pre-assigned confidence levels (as from Table 3).
We focused on common pathways between the highest ranked MCODE module (M1) and the PPI module (BIONET).
In 2004, on the 30th anniversary of the Dungeons & Dragons game, Dungeon magazine ranked the module as the second greatest Dungeons & Dragons adventure of all time behind Queen of the Spiders.
Then, we ranked anchored modules according to differential expression of the module's eigengene and susceptibility status.
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