Exact(15)
Simulated datasets were designed to determine whether an optimal range of sequence divergence exists across extreme phylogenetic conditions.
Simulated datasets show that an optimal range of sequence divergence exists across diverse topologies and models of evolution.
We show its superiority over conventional methods for phylogenetic studies with a broad range of sequence divergence in and beyond the twilight zone of remote homology.
The range of sequence divergence in the rat Mup genes is instead intermediate to the two mouse classes, being 91 98% identical at the cDNA level (fig. 6B).
In spite of being a DNA virus, TTV has an extremely wide range of sequence divergence.
The whole set of four nematode genomes is consequently in an ideal range of sequence divergence for phylogenetic footprinting.
Similar(45)
Here, we address the former question, and its implications for the latter, by measuring the ability of a species-specific DNA re-sequencing microarray to recover information from experimental DNAs over a wide range of sequence divergences.
The Saccharomyces sensu stricto complex offers a powerful range of sequence divergences that have allowed the mapping of functional elements [ 4, 5], improved genome annotation and comparisons of genome organization [ 7, 19, 41].
Genes showing signs of saturated divergence were excluded because codeml results are reliable for moderate ranges of sequence divergence.
Sequence similarity among the 244 GmMYBs at the cDNA level showed a high degree of sequence divergence ranging from 5.50% to 99% in the open reading frame (ORF).
Our estimates of the divergence time of the two haplotype clades in great reed warblers range from 18 kyr BP with the IMa method to 65 87 kyr BP based the degree of sequence divergence.
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