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These haplotypes differed at 10 nucleotide positions, revealing a difference well within the observed range of divergence among P. miles individuals collected in the Red Sea28.
Across all genes we found that an optimal range of divergence for resolving the correct relationships does exist, although this level of divergence expectedly depends on the distance metric.
For aero-elastic applications, localised stiffening can be used to replace the more destructive flutter instability that follows divergence at higher flow speeds by an extended range of divergence.
The network also shows the wide range of divergence among haplotypes (0.2% 1.3%) with many of the unique haplotypes at the higher end of the divergence scale.
The ranking of training set probabilities allowed the range of divergence between populations to be scrutinized and it was then possible to identify a region of the probability plot where assignments carried a higher risk of misclassification error.
t = range of divergence time (days).
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The Crangonidae showed the highest range of divergences within a family, the Pandalidae within genus and Parastacidae within species (Figure 3).
Mid-peninsular phylogeographic breaks have been reported in multiple taxa [e.g., 22]; but a broad range of divergences is observed, with some showing deep [46], [49], [51], while others shallower phylogeographic breaks [22].
Why does the SWS1 visual pigment gene exhibit useful phylogenetic characteristics across such a wide range of divergences in vertebrates?
Toward this end, a core challenge of population genomic and phylogenetic studies is obtaining a reliable set of orthologous loci from a sufficient number of individuals across populations or species spanning a range of divergences [ 6].
We selected cutoffs of 1% (7 bp), 2% (13 bp), and 3% (20 bp) for further analyses, based on prior evidence that they span the range of divergences most useful for delimiting hymenopteran species [ 1, 2, 32, 33].
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