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LoQ uM can work with a wide range of alignment tools to run the aligner for the user, compile the mappings returned by the aligner, calibrate the quality of these mappings and return the list of mappings with more reliable mapping quality scores.
Other types of analysis based on a range of alignment procedures and search algorithms also confirmed these results (Gómez-Zurita et al., submitted).
(iii) a range of alignment columns to which the search for shared k-mers is restricted.
We have comprehensively evaluated the VORESCORE method for a range of alignment and threading methods.
For structure alignments, the techniques are very fast, reliable and tolerant of a range of alignment parameters.
During this process, the maximum-likelihood algorithm considers for each particle a broader range of alignment possibilities, each weighted by a certain profile.
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However, the project alignment selected as the best of a range of alignments cannot avoid passing beneath the historical and cultural heritages of Istanbul as well as under ancient and densely inhabited areas of the city.
However, it is certainly worth considering that MetaPSICOV might be further improved by also being trained on a range of alignments, and this is something that we may explore in the future.
Moreover, MAFFT offers a range of multiple alignment methods including alignment of a very large number of sequences, a feature needed either for very large multigene families or when a large number of species is employed.
Using electrically aligned scaffolds, fibroblast directionality deviations can be maintained in the range of nanofiber alignment deviation for fiber sizes down to ∼100 nm.
Thereinto, coarse alignment, measured from two superposed "+" bars, guarantees the misalignment across wafer and mask within the measurement range of fine alignment, which is based on moiré fringes formed by the superposition of linear grating arrays.
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