Sentence examples for random sequence addition from inspiring English sources

Exact(47)

The alignment matrices were analyzed by the maximum parsimony (MP) using PAUP* version 4.0b10 (Swofford 2003) with tree-bisection-reconnection (TBR) branch swapping and the MULTREES (holding multiple trees) option in effect with 1000 replicates of random sequence addition.

The most parsimonious trees were obtained with heuristic searches of 1,000 replicates with random stepwise sequences addition, tree bisection-reconnection (TBR) branch swapping, collapse of zero-length branches, with the multiple-tree option in effect, and saving up to 10,000 trees from each random sequence addition.

Heuristic ML searches were performed with 100 replicates of random sequence addition and tree bisection reconnection (TBR) branch swapping.

We conducted 100 random sequence addition replicates under both clustering-constrained and unconstrained conditions and both ML and MP.

Per replicate, 10 independent random sequence addition runs followed by TBR branch swapping were conducted, saving only a single most parsimonious tree per run.

Maximum parsimony(MP) analyses were conducted using PAUP version 4.0b10 [29] on G5 Macintosh computers by heuristic search and tree bisection reconnection (TBR) branch swapping with 1000 search replicates, each replicate with random sequence addition.

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Similar(13)

One thousand homogeneity replicates of heuristic searches were conducted with 100 random sequence additions and MulTrees not in effect.

Heuristic searches implemented 500 random sequence additions, saving one tree per replication.

Branch support was assessed with 100 bootstrap replications, with 10 random sequence additions per replicate.

For the maximum parsimony analysis starting trees were obtained by stepwise addition with 100 random sequence additions.

MP was run with "maxtrees" set to 5,000,000 and 1000 random sequence additions and NJ trees were built using uncorrected sequence distances.

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