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First, in the consensus structure of each query determined by PMmulti and used by Infernal, functional domains should be occupied by sequences conserved in the 10 mammals.
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An interval stabbing query determines which of the intervals in a set overlap a query point.
In conclusion the given examples show how the database content and the nature of the query determine the difference in performance between the parallel and the non-parallel substructure search.
Because each query produced only one high-scoring hit located between HoxC11 and HoxC12, the structures of queries determined by PMmulti and Infernal should be reasonable.
When hydrophilic amino acids are encountered, a mechanical set of queries determines if secondary structure is present.
The second idea is that the number of Web documents downloaded for each query is determined according to the "query relevance".
For the second stage, we performed a local replication analysis based on a 500 kb linkage disequilibrium (LD) block containing a query SNP determined by the SNPs most distant from the query SNP with r ≥ 0.3.
The articles are retrieved through the MEDLINE index; citations are ranked according to their similarity to the query as determined by Lucene's (http://lucene.apache.org/core/) scoring algorithm.
The Local k-mer Frequency (LKF) track represents a self-analysis: the frequencies of overlapping 20-mers in the query are determined relative to the 453 kb region alone.
The queries are then analysed and candidate queries are determined by ranking method which are recommended to other similar users who will approach the warehouse in the future.
The similarity between the queries is determined by minimum number of edges [15] which separate the query references in the ontology which is called the Rada distance.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com