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Table 1 Query datasets description S. no.
Fig. 11 StreamAligner accuracy evaluation to map different query datasets on (a) Chr1 and (b) Chr21.
All query datasets of length below 100 bp are allowed to have one error (mismatch or indel) while others are allowed to have two errors.
Fig. 12 StreamAligner accuracy evaluation to map (a) AML and (b) BRL query datasets on Chr1. Figure 12 shows number of read matches found by CloudBurst, SparkBWA and StreamAligner during mapping of AML and BRL datasets on Chr1.
IRTK [41] was used to perform a suite of affine and nonrigid (free-form) registration between the atlas and the query datasets.
Both reference and query datasets have 256 sequences, and the execution time was measured in seconds.
Similar(46)
Results also show that performance of StreamAligner gets better in comparison to SparkBWA as the size of query dataset increases.
Further, we introduce a novel cache replacement strategy, fine-tuned to the described query dataset, and include explicit support for the Open World Assumption.
The trained classifier can be used to distinguish true positive PPI pairs from the noisy query dataset based on the values of genomic evidences of each pair.
The query dataset used for the analysis is the proteome of M. tuberculosis H37Rv.
The main measure of the similarity between a query dataset and a target dataset was the frequency of similar pairs, which is the number of similar pairs normalized by the size of the query dataset.
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