Sentence examples for quality alignment from inspiring English sources

As the entire data from the ten subjects contained too many sequences for a quality alignment, sequences were aligned by subject using the Aligner web tool of the RDP, and then clustered using the Complete Linkage Clustering tool (with a maximum distance cutoff of 97%).

The purpose of this study was to create and validate an aligner with the goal of quickly generating a high quality alignment and having the flexibility to use any reference alignment.

Done properly, this can produce a better quality alignment than automated methods alone.

This strategy allowed us to make a high quality alignment for the first ∼1075 aa, and the last ∼500 aa.

However, all taxonomic groups are monophyletic in the STAP alignment based tree (Figure S3), suggesting that a high quality alignment might make up for poor species sampling.

Single best mappings were derived from AS reads by setting Bowtie to report only the single highest quality alignment per read.

Here I described and validated a variation of the greengenes and SILVA aligners and showed that this aligner quickly generates a high-quality alignment.

Protein models were aligned using MUSCLE and low-quality alignment regions were removed by TrimAl (Edgar 2004; Capella-Gutierrez et al. 2009).

Channel protein sequences were aligned with the use of MUSCLE (Edgar, 2004), and low-quality alignment regions were removed by the TrimAl program (Capella-Gutiérrez et al., 2009).

By contrast, iterative methods can return to previously calculated pairwise alignments or sub-MSAs incorporating subsets of the query sequence as a means of optimizing a general objective function such as finding a high-quality alignment score.

These databases provide high-quality alignment that combine sequence and structural information.