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Out of 3,618 markers mapped, 295 corresponded to putatively expressed sequences, and for most of these (234), a putative function could be proposed based on similarity searches (Additional file 4).
LOC_Os11g32030 encodes for the Sex determination protein Tassel seed-2 which is putatively expressed in rice.
We identified 15 proteins putatively expressed in the haustorial samples and 14 proteins putatively expressed in the hyphal samples (Table 4).
A family was said to be putatively expressed if it had at least one EST match.
A gene was said to be putatively expressed if it had at least one EST match.
The EST database search revealed that 16 out of 18 gene models are putatively expressed.
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The 26S ribosomal RNA gene was chosen because of its putative map position on chromosome 6 and high fold change, whereas the gene putatively expressing a metallothionein-like protein was selected due to its high fold change and differential expression at all time points.
Gas vesicles putatively expressing recombinant GvpC containing Tat, Rev or Nef1 peptides were isolated from the appropriately transformed SD109 cultures.
The gene putatively expressing a 14-3-3-like 14-3-3-like 14-3-3-like 14-3-3-likethionine synthetase 1 were selected due to their exproteinn pattern, and the germin-like protein 4 due to its mandlocathen on chromosome 3.
The analysis revealed a pattern very similar to the previous study on a much smaller dataset [ 74]: codons ending with C or G dominate over codons ending with A or U in putatively highly expressed genes, while the putatively weakly expressed genes have a more uniform amino acid usage.
To compare these putatively differently expressed S. stercoralis contigs with the expression of S. ratti contigs, measured by microarray analysis, we identified matching S. ratti and S. stercoralis contigs by local BLAST alignment of representative S. stercoralis contig consensus sequences to S. ratti representative contig consensus sequences.
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