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Only 13 contigs belonging to 10 miRNA families had a putative secondary structure (Table 3).
Putative secondary structures were characterized using the Vienna RNA package (PMID: 16452114).
The combined putative secondary metabolite pathways account for approximately 380 Kb, or nearly 7% of the T. turnerae genome.
Earlier we have shown that the putative secondary structure of IRF2 5'UTR RNA (predicted by using the MFOLD program) [5], [16].
The HIV codon covariation analysis can be used to identify linked pathways of immune escape, as well as putative secondary and/or compensatory mutations associated with a primary escape site.
We have probed the putative secondary structure of the IRF2 5'UTR RNA using various enzymatic and chemical modification agents to constrain the secondary structure predicted from RNA folding algorithm Mfold.
Putative secondary metabolite clusters were identified with antiSMash [ 120].
This observation suggested putative secondary loss of the intron.
They have also analyzed all available CRISPR repeated sequences and their putative secondary structures.
Thirteen of 24 predicted PKSs were identified as members of putative secondary metabolism pathways.
Several putative secondary B-cell folliclesituateded in the periphery of the nodes were observed.
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