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Our results show that PhylOnt is a rich ontology for the concepts in phylogeny applications compared to putative alternatives such as EDAM and CDAO [ 17].
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The Tory party has become so ungovernable that no putative alternative leader, including Boris Johnson, who has zigged and zagged on the issue every bit as much as Mr Cameron, could manage its self-destructive passions.
Putative alternative splicings and redundancy were also filtered as follows.
NeighborNet analyses were employed to explore putative alternative relationships.
Putative alternative promoters were identified using the First-Exon and Promoter Prediction software (UCSC Genome Bioinformatics) [25].
This is further supported by the overrepresentation of putative transcription factor binding sites, conserved in human, mice and rats, upstream of putative alternative transcription start sites.
The other set of nodes (orange circle) contains many phosphorylation sites associated with cytoskeletal dynamics such as paxillin, filaminB, as well as SFRS9, a putative alternative splicing factor.
These changes correspond to putative alternative isoforms several of which are novel that are differentially expressed between tumors of varying metastatic phenotypes.
In the putative alternative promoter region in intron 5, the marker m5.3 (C/T variant) was located 2 bp from the potential transcription start.
The software Eponine (Sanger) predicts multiple low-score (ambiquious) TSS sites are predicted by the Eponine, the CorePromoter [56] denotes ten putative TSSs with comparable low scores and the AceView [57] predicts three putative alternative promoters for the SLC6A3 gene.
Furthermore, a strong association with putative alternative intermediates of the 18S rRNA-maturation pathway (21S- and 22S-pre-rRNA) [31], [32] for discussion} became evident (Fig. 3A, lanes 1 and 2).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com