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Apart from the models submitted for the CHEMDNER challenge we have also considered ChemDataExtractor [22], a recently introduced general purpose package for chemical text analyses, because its NER model is very much akin to [9], which is unavailable.
Cogito is a more general purpose package, but it has also been tailored to the biomedical domain.
WinBUGS is the most popular general purpose package for Bayesian analysis with now more than 30,000 registered users.
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A general purpose software package for the geometry and dynamics of an interface has been extracted from the FronTier code developed by the authors and colleagues, and is now publicly available.
First, a comprehensive locomotive-track model is generated using a multi-body dynamics approach with GENSYS software, which is a tool for modelling vehicles running on rails (but in its design GENSYS is a general multi purpose software package for modelling mechanical, electrical and/or mathematical problems).
At the present time, this typically involves using off-the-shelf documentation software, such as the ubiquitous Microsoft Word and Excel, and software such as ChemDraw or ChemDoodle that is specially designed to help chemists create graphics for incorporation into such general purpose packages.
There have been a variety of software packages developed for image cytometry both on the commercial and academic sides [22]; however, there are no general purpose software packages designed to address particular situations.
Moodle and Drupal [ 49 51] are two successful examples of LMSs (other more general purpose software packages are available at wordpress.com, dotnetnuke.com, educommons.com, atutor.ca).
The downside of general purpose software packages is that, usually, they are much more complex than dedicated software in terms of number of lines of code required, structure and time required for developing and testing.
The software used to perform numerical continuation is DDE-BIFTOOL [3], the first general-purpose package for bifurcation analysis of DDEs.
The algorithms are implemented in the Rssa and BioSSA packages in R. Rssa is a general-purpose package containing effective implementation of singular spectrum analysis and its 2D extensions.
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