In this respect, the last (beta) version of GINsim allows users to get rid of (pseudo-) output species that do not regulate other nodes or regulate only pseudo-output nodes.
To contain the size of the state transition graph, we can reduce the model by removing all (pseudo-) output nodes (cf. Methods).
The non-linear re-parameterization utilizes the three system rate functions as pseudo-outputs in order to perform a non-linear transformation which reduces the dimension of the parameter space from twelve to three.
Applying this reduction and thereby eliminating 11 nodes as (pseudo-) outputs results in a significant reduction of the state transition graph (down to 546 states, Figure 5A).
It has a very effective switching structure and composed of three modules, a motion acceleration detector, a pseudo-accelerometer output estimator, and a linear acceleration estimator.
These pseudo-dynamic outputs, such as displacement and hysteretic responses, can be treated as references for analytical models proposed to simulate the load-displacement relationship.
Genomic windows which were defined by reading blocks of a fixed number of reads in the normal sample allowed the generation of a pseudo-CGH data output as described in the Methods section.
The resulting pseudo-CGH data output was segmented using the circular binary segmentation (CBS) algorithm as implemented in the DNAcopy Bioconductor package (Venkatraman E. Seshan and Adam Olshen, DNAcopy: DNA copy number data analysis. R package version 1.25.1).
For an -point signal, a binary key sequence of length is generated using a cryptographically secure pseudo random number generator, the output of which belongs to either or.
Figure 8 shows the output of the pseudo Wigner-Ville representation of heart beat signal from a sample file in the Pascal DigiScope dataset (Table 1).
Minimal cardiac output of this Pseudo-PEA state was insufficient for CBF.
