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The operation of the water distribution system could not be discerned when proximate census blocks were used as a surrogate for exposure.
The significant variation among genome blocks either proximate or distant from replication origins prompted us to conduct a regression of substitution rates (d N and d S) on the proximity of each ortholog to its nearest replication origin (fig. 3).
In Kenya, the randomisation is identical but includes nine proximate clusters in each block with allocation probabilities of 2/9 for active control, 1/9 for each intervention arm and 1/9 for a potential passive control (not yet funded).
The blocks of explanatory variables most proximate to the individual were added first and those most distant last, until a final model consisting of the main independent variable and all six blocks was constructed.
The block DFT filters detection and the block LMS detection should have the proximate performance.
We also observe a depletion of insulator CTCF elements within our domains when compared to the domains of Dixon et al. This observation is consistent with the assumption that transcriptional regulation is more active within spatially proximate domains since there are fewer elements blocking regulation within these domains.
(C) Approximate genomic location (in kilo-bases) of the 24 CNEs (white blocks) under study and the three proximate genes (yellow blocks; HMX3, HMX2 and BUB3 – left to right) – see legend of Additional file 7 : Figure S6 for full details.
(A) The approximate genomic location (in kilo-bases) of the 24 CNEs (white blocks) under study and the three proximate genes (yellow blocks; HMX3, HMX2 and BUB3 – left to right), also present in this region is RP11-162A23.5 (grey block) which is a pseudogene, based on the H. sapiens genome (Ensembl release 75).
In a last step, as we choose to use the method proposed by MERLIN to take into account the LD between SNPs in linkage analysis, we deleted additional 16876 SNPs which were in complete association (r2 = 1) with another proximate SNP in our data to avoid large block of SNPs.
To further explore the coexpression of proximate genes, we partitioned the genes into non-overlapping blocks of k (3 ≤ k ≤ 20) physically adjacent genes according to their start position.
My sister, Satya, lives several blocks from downtown, in a tiny bungalow safely proximate to the ocean.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com