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The built-in BLAST in HelicoBase provides two main functions: (1) standard BLAST which will search the provided query sequence against genome or ORF sequences (either nucleotide or protein) in HelicoBase; (2) VFDB BLAST which searches the provided query sequence against the Virulence Factor Database (VFDB) [ 43, 44, 52].
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Briefly, CLASP provides three main functions that are agnostic of the details of the origin or coding of the genotype data (Additional file 4). 1) Genotype data are recoded and imported along with sample and SNP annotations into an SQLite relational database (http://www.sqlite.org).org
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This double wall thickness provides two main benefits.
To fill this gap, this paper provides two main contributions.
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Our analysis provides three main findings.
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