Sentence examples for provided alignments from inspiring English sources

They also provided alignments encompassing LTRs of most of beta-, gamma- and lentiretroviruslike LTRs, presenting further insight into the common LTR structure of these genera.

The J2315 gene sequences were searched against the genomic sequences using the BLASTN algorithm version 2.2.18 (nucleotide level) [36] for matches that provided alignments covering at least 70% of the length of the query sequence (homolog present).

For each dataset, the quality of the alignments obtained with CLUSTALW and MUSCLE, was evaluated with T-COFFEE (CLUSTALW and MUSCLE provided alignments of comparable quality, not shown) [ 45].

Since DNNs cannot align context-dependent states to time frames of the training data, an auxiliary GMM triphone system is trained with the ML criterion to provide alignments for the DNN training.

Vertical dotted lines provide alignments between abundant siRNAs and the P4R2 RNAs.

The insect sequences are rather longer than the ones from vertebrates, and several gaps have to be introduced to provide alignments (Fig. 3, 4, 5).

The BLASTX amino acid based algorithm provides alignments of the six-frame translated EST relative to the protein database and thereby is more sensitive to elements of functionality and homology than DNA alignments and accurately reveals reading frames [ 41, 59].

It takes as input either the sequence or the structure of a protein and provides alignments with its homologs along with a variety of structural and functional annotations through an interactive interface.

Dotted vertical lines provide alignments and show that the ends of highly abundant (>100 reads) siRNA species tend to coincide with the ends of P4R2 RNAs for which there is more than a single read.

Rfam provides alignments of the RNA sequences in a family, but these are built with reference to their secondary structure, rather than the evolutionary history of any particular locus.

We are grateful to M. Hahn for providing alignments and useful discussion and to A. Kondrashov, Y. Wolf and three anonymous reviewers for helpful suggestions on improving the analysis and the manuscript.