Compared with the humanhuman protein interactions, the coverage of humanparasite interaction is much lower and might be biased.
The experimental results showed that the non-specific adsorption of these proteins was significantly reduced by the coverage of gold surfaces with TSHP.
The realization that sequence alone is not enough to understand/predict function led to the establishment of large structural genomics initiatives where the structure of proteins with low sequence similarity to proteins with known structures were targeted to increase the coverage of fold space and permit more accurate fold recognition, threading and homology modeling (Baker and Sali, 2001).
Alignments in which the coverage of the query protein was less than 0.3 were removed.
This demonstrates the coverage of the existing EST collection, with over 50% of protein sequence derived from survey reads matching Glycine proteins that are already known.
The set of amino acid sequences of putative anammoxosomal proteins ("set A") was first constructed from the cytochrome c proteins with a peptide coverage of more than 10% in an experimental analysis of the K. stuttgartiensis proteome (Kartal et al., unpublished data).
It contains ∼14 000 models for protein families and covers almost 80% of known protein sequences with ∼50% coverage of amino acids.
H. brasiliensis proteins with coverage of more than 90% of A. thaliana NBS-LRR proteins extracted from PlantGDB, NCBI, and TAIR were sorted based on BLASTP with E-value < 10-5, with further confirmations from NCBI Conserved Domain Database domain hits.
In general, sequence comparison analyses revealed that the predicted ERAD-associated orthologous pairs in Arabidopsis and soybean shared significant amino acid sequence conservation (e-values < 10E-10, sequence sequencetiesimilaritiesties of higher thand50 %, widentitiesn sequence coferage of greater thigher %).
A considerable improvement of protein length coverage was observed in orthologs (average protein length coverage was 74%), when compared to the protein coverage of the overall dataset (average protein length coverage of 53%).
