Scientific Protein set up a subsidiary in China in the 1990s, but the company's roots are in Wisconsin, where it was founded by Oscar Mayer, of hot dog fame, to use the animal byproducts of its food products.
Sources for each protein set are listed in Table 3.
Several levels of granularity are associated with this protein set.
The invariant protein set was determined by visual inspection of the plot.
All methods began with all-vs-all BLASTP [177], [178] of the complete protein set.
With this strategy, we scored both the background protein set and the known phosphorylated proteins.
Predicted E. tarda EIB202-specific genes were detected by screening EIB202 protein set against orthologs.
The background protein set contains all the human proteins of Swiss-Prot database (version 56.0).
TBLASTX revealed more homologous amino acid sequences than BLASTX, possibly reflecting deficiencies in the predicted protein set of An. gambiae.
The application of TD to a protein set leads to biological insights that can reveal intriguing patterns in the data.
As described above, the background protein set was constructed from all the human proteins in the Swiss-Prot database.
