Sentence examples for protein alignment from inspiring English sources

Smad and receptor nucleotide sequences were aligned with protein alignment as guide using RevTrans-1.4.

Orthologous coding sequences without signal peptides were aligned following the protein alignment by ClustalW (www.ebi.ac.uk/clustalw/).ac.uk/clustalw/

The DNA sequences were aligned based on the protein alignment.

Protein sequences were aligned using ClustalW [ 23], then protein alignment was backtranslated to obtain codon alignment.

Codons were aligned guided by a clustalw [25] protein alignment (default parameters).

Parsimony analyses were performed using the protein alignment as input.

The optimal models were JTT [35] and gamma distributed across-site rate variation for both the TRPV1/2 protein alignment and the TRPM8 protein alignment.

The entropy at each position in protein alignment was measured with Shannon's entropy [55].

Therefore, the fitness function can be represented as an increasing function of a protein alignment score.

Current protein alignment methods are often slow and require assumptions about relatedness and evolutionary mechanisms [2].

The resulting protein alignment was reviewed and finalized using the multiple alignment sequence editor MASE.