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These differences may relate to the cohorts used as earlier studies had higher proportions of node positive (Zhou et al, 2004), subsequently metastatic (Akcakanat et al, 2008) or high-grade cases (Rojo et al, 2007).
This may be related to known differences in these studies: smaller numbers of observations, higher proportions of node positive patients, different treatments and larger tumors (Supplementary Figs S6 S9).
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This was also the case when the proportions of nodes lacking an axillary shoot were compared (χ = 72.3, p < 0.0001).
Bramoullé et al. (2009) find that this varies with graph density, i.e. the proportion of node pairs that are linked; and the level of clustering, i.e. the proportion of node triples such that precisely two of the possible three edges are connected.14 Instrument strength is declining in density, since the number of intransitive triads tends to zero, reducing the variation in the instrument.
Posterior intervals on nodes became narrower, as a proportion of node age, with increasing root age under all relaxed clock analyses, but this trend was clearer in MCMCTREE.
This last result reflects the higher proportion of node negative tumors in the G2I-3 group than in the G2I-2 group (71%and49%9% respectively; Additional file 4).
Delivery Ratio is the average proportion of nodes reached by a broadcast on the network.
Degree centrality (denoted dc)): This is given by the proportion of nodes directly connected to the target node.
Top panels represent the proportion of nodes with Δ l > 1 and Δ l ≤ 1 per degree class.
In the figure, we plot the average Reachability, which is defined as the proportion of nodes that have a path to their destination, versus the expected node degree.
6 Clustering coefficient measures the proportion of nodes' neighbors that can be reached by other neighbors [13], i.e., it also considers the connectivity among neighbors.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com