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Beta values between 0 and 1 reflect the proportion sites methylated at a given locus.
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The proportion of sites that fall into this site class provides insight into the selective pressure experienced by the gene.
Selection site-specific model assumes a third proportion of sites with KA/KS estimated from the data.
We examined stroke trial related factors associated with the proportion of sites with low patient enrollment and the effect of these low-enrollment sites on trial outcome.
In contrast, sauropsid Gal-1B showed a relatively lower proportion of sites with invariant and single variant residues and a higher proportion of sites with more than two residues (table 1).
This suggested that when designing the SWC sampling, the proportion of sites on the middle slope can be reduced to 16.7% of the total number of sites.
Whereas M1a and M7 allow only for neutral evolution and purifying selection at some proportion of sites, M2a, M3, and M8 also allow for the possibility of positive selection at a proportion of sites.
These models permit the inference of positive selection at a small proportion of sites, so that the signal of positive selection is not swamped by the (usually) much larger proportion of sites which are neutral or under negative selection.
Finally, roughly the same proportion of sites occupied "tendrils" or "tubes" that cannot reach, or be reached from, the core.
PhyML parameters were nb bootstrapped data sets = 100; substitution model = WAG; proportion invariable sites = 0.0; nb categories = 4.
For each gene we then determined the proportion of sites that were above each of these percentiles.
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