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Proportion scores for each SNP were then calculated and segmented in order to find regions of similar status and segments with a mean proportion score for all SNPs in the region >0.15 (as recommended by Partek) were considered imbalanced.
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Inter-pathologist agreement was 0.96 for intensity scores, and 0.97 and 0.99 for proportion scores for Allred and Quickscore, respectively.
Collen et al. estimated fair proportion scores for 250 of these remaining species by attributing to each the average of the scores across its relevant genus.
For example, if document d1 has 100 words and 40 of them were assigned by the topic model to topic t1 and 60 of them were assigned to topic t2, then for document d1, the proportion score is 0.4 for topic t1 and 0.6 for topic t2 and 0 for the rest of the topics.
A proportion score was calculated for each child for each of the eight social categories based on the proportion of time intervals spent in each category (relative to total number of time intervals).
The segment displaying the highest degree of imbalance across a chromosome arm (based on proportion score) is also listed for specific examples.
Briefly, a proportion score and an intensity score were determined for each tumor sample.
This was also true for patients with high proportion score (Table 1, Figure 1).
The number of cases with higher Allred proportion scores was smaller for proteins expressed for a shorter period of cell cycle (Table 3).
Evaluation of CEACAM immunohistochemistry was performed based on the staining proportion scoring systems used for CEACAM1 immunohistochemistry (Sienel et al, 2003; Dango et al, 2008) with some modifications.
Aromatase immunoreactivity was evaluated according to the immunointensity proportion scoring systems used for breast carcinoma tissues with some modifications [ 24, 26, 27].
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