Sentence examples for proportion of the alignment from inspiring English sources

That is, a larger proportion of the alignment space could be explored by running distinct programs.

A considerable proportion of the alignment contained gaps or highly diverged residues due to the long divergence time among these distantly related species.

This is in accordance with the prediction that the use of different alignment programs, instead of using a single software under a range of parameters, is sufficient to cover a large proportion of the alignment space.

Gblocks, ver. 0.91 [ 61] was used to identify unambiguously aligned proportions of the alignments.

To evaluate the quality of the RNA-seq data, we investigated the proportion of read alignments in the genome, the continuity of reads (3'/5' bias) along transcriptional units (TUs) and sequencing saturation.

Perhaps more importantly, our method also allows for a memory footprint reduction that is proportional to the gappyness (proportion of missing data) of the alignment.

The distance values show the number of substitutions as a proportion of the length of the alignments.

However, third codon positions also represent a large proportion of the variable sites in the alignment, and removing them may exclude much of the phylogenetic information in some parts of the tree.

For this, a non-consensus amino acid has to be present above a user-specified threshold proportion in one of the alignments.

For two sequences of amino acids p a and p b, we set π[ p a, p b ] to the (highest) identity proportion of an alignment of p a and p b.

We find that for the hemagglutinin gene, a proportion of sequence alignments support the split of subtype B from subtype C after the split between subtypes A-H3N2 and B, in opposition to the topology enforced in our analysis.